Load edges from edge list for single cell network

Source: R/helper_functions.R

CID.LoadEdges loads edges, typically after running the SPRING pipeline.

CID.LoadEdges(data.dir)

Arguments

data.dir

A directory where "edges.csv" file is located

Value

The edge list in data frame format

Examples

if (FALSE) {
# Loads edges
file.dir = "https://kleintools.hms.harvard.edu/tools/client_datasets/"
file = "CITESEQ_EXPLORATORY_CITESEQ_5K_PBMCS/FullDataset_v1_protein/edges.csv"
download.file(paste0(file.dir, file, "?raw=true"), destfile = "edges.csv")

# data.dir is your path to the "edges.csv" file
edges = CID.LoadEdges(data.dir = ".")
}